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Registro Completo |
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Biblioteca(s): |
Embrapa Acre; Embrapa Amapá; Embrapa Amazônia Oriental. |
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Data corrente: |
12/01/2017 |
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Data da última atualização: |
20/05/2022 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Autoria: |
PIPONIOT, C.; SIST, P.; MAZZEI, L.; PEÑA-CLAROS, M.; PUTZ, F. E.; RUTISHAUSER, E.; SHENKIN, A.; ASCARRUNZ, N.; AZEVEDO, C. P. de; BARALOTO, C.; FRANÇA, M.; GUEDES, M.; CORONADO, E. N. H.; OLIVEIRA, M. V. N. d'; RUSCHEL, A. R.; SILVA, K. E. da; SOTTA, E. D.; SOUZA, C. R. de; VIDAL, E.; WEST, T. A. P.; HERAULT, B. |
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Afiliação: |
Camille Piponiot, Université de la Guyane; Plinio Sist, CIRAD; LUCAS JOSE MAZZEI DE FREITAS, CPATU; Marielos Peña-Claros, Forest Ecology and Forest Management Group; Francis E. Putz, University of Florida; Ervan Rutishauser, CarboForExpert; Alexander Shenkin, University of Oxford; Nataly Ascarrunz, IBIF; CELSO PAULO DE AZEVEDO, CPAA; Christopher Baraloto, International Center for Tropical Botany; Mabiane França, BOLSISTA CPAA; MARCELINO CARNEIRO GUEDES, CPAF-AP; Eurídice N. Honorio Coronado, Instituto de Investigaciones de la Amazonia Peruana; MARCUS VINICIO NEVES D OLIVEIRA, CPAF-Acre; ADEMIR ROBERTO RUSCHEL, CPATU; KATIA EMIDIO DA SILVA, CPAA; ELENEIDE DOFF SOTTA, CPAF-AP; CINTIA RODRIGUES DE SOUZA, CPAA; Edson Vidal, ESALQ; Thales A. P. West, University of Florida; Bruno Herault, CIRAD. |
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Título: |
Carbon recovery dynamics following disturbance by selective logging in Amazonian forests. |
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Ano de publicação: |
2016 |
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Fonte/Imprenta: |
eLife, p. 1-19, Dec. 2016. |
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DOI: |
http://dx.doi.org/10.7554/eLife.21394 |
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Idioma: |
Inglês |
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Conteúdo: |
When 2 Mha of Amazonian forests are disturbed by selective logging each year, more than 90 Tg of carbon (C) is emitted to the atmosphere. Emissions are then counterbalanced by forest regrowth. With an original modelling approach, calibrated on a network of 133 permanent forest plots (175 ha total) across Amazonia, we link regional differences in climate, soil and initial biomass with survivors' and recruits' C fluxes to provide Amazon wide predictions of post-logging C recovery. |
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Palavras-Chave: |
Análisis estadístico; Cambio climático; Carbon stocks; Emissão de carbono; Explotación forestal; Rain forest; Reservorios de carbono; Selva tropical. |
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Thesagro: |
Análise estatística; Extração da madeira; Floresta; Floresta tropical; Mudança Climática. |
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Thesaurus Nal: |
Amazonia; Carbon sinks; Climate change; Logging; Statistical analysis. |
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Categoria do assunto: |
P Recursos Naturais, Ciências Ambientais e da Terra |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/153275/1/e21394-download.pdf
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Marc: |
LEADER 02098naa a2200589 a 4500
001 2060674
005 2022-05-20
008 2016 bl uuuu u00u1 u #d
024 7 $ahttp://dx.doi.org/10.7554/eLife.21394$2DOI
100 1 $aPIPONIOT, C.
245 $aCarbon recovery dynamics following disturbance by selective logging in Amazonian forests.$h[electronic resource]
260 $c2016
520 $aWhen 2 Mha of Amazonian forests are disturbed by selective logging each year, more than 90 Tg of carbon (C) is emitted to the atmosphere. Emissions are then counterbalanced by forest regrowth. With an original modelling approach, calibrated on a network of 133 permanent forest plots (175 ha total) across Amazonia, we link regional differences in climate, soil and initial biomass with survivors' and recruits' C fluxes to provide Amazon wide predictions of post-logging C recovery.
650 $aAmazonia
650 $aCarbon sinks
650 $aClimate change
650 $aLogging
650 $aStatistical analysis
650 $aAnálise estatística
650 $aExtração da madeira
650 $aFloresta
650 $aFloresta tropical
650 $aMudança Climática
653 $aAnálisis estadístico
653 $aCambio climático
653 $aCarbon stocks
653 $aEmissão de carbono
653 $aExplotación forestal
653 $aRain forest
653 $aReservorios de carbono
653 $aSelva tropical
700 1 $aSIST, P.
700 1 $aMAZZEI, L.
700 1 $aPEÑA-CLAROS, M.
700 1 $aPUTZ, F. E.
700 1 $aRUTISHAUSER, E.
700 1 $aSHENKIN, A.
700 1 $aASCARRUNZ, N.
700 1 $aAZEVEDO, C. P. de
700 1 $aBARALOTO, C.
700 1 $aFRANÇA, M.
700 1 $aGUEDES, M.
700 1 $aCORONADO, E. N. H.
700 1 $aOLIVEIRA, M. V. N. d'
700 1 $aRUSCHEL, A. R.
700 1 $aSILVA, K. E. da
700 1 $aSOTTA, E. D.
700 1 $aSOUZA, C. R. de
700 1 $aVIDAL, E.
700 1 $aWEST, T. A. P.
700 1 $aHERAULT, B.
773 $teLife, p. 1-19, Dec. 2016.
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Registro original: |
Embrapa Amazônia Oriental (CPATU) |
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 | Acesso ao texto completo restrito à biblioteca da Embrapa Gado de Leite. Para informações adicionais entre em contato com cnpgl.biblioteca@embrapa.br. |
Registro Completo
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Biblioteca(s): |
Embrapa Gado de Leite. |
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Data corrente: |
07/12/2016 |
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Data da última atualização: |
06/02/2024 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Circulação/Nível: |
A - 1 |
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Autoria: |
UTSUNOMIYA, A. T. H.; SANTOS, D. J. A.; BOISON, S. A.; UTSUNOMIYA, Y. T.; MILANESI, M.; BICKHART, D. M.; AJMONE-MARSAN, P.; SOLKNER, J.; GARCIA, J. F.; FONSECA, R. da; SILVA, M. V. G. B. |
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Afiliação: |
Adam T. H. Utsunomiya, UNESP; Daniel J. A. Santos, UNESP; Solomon A. Boison, Nofima, Ås, Norway; Yuri T. Utsunomiya, UNESP; Marco Milanesi, UNESP; Derek M. Bickhart, ARS, USDA, Beltsville; Paolo Ajmone-Marsan, Università Cattolica del Sacro Cuore, Piacenza, Italy; Johann Sölkner, BOKU - University of Natural Resources and Life Sciences, Vienna, Austria; José F. Garcia, UNESP / IAEA; Ricardo da Fonseca, UNESP; MARCOS VINICIUS GUALBERTO B SILVA, CNPGL. |
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Título: |
Revealing misassembled segments in the bovine reference genome by high resolution linkage disequilibrium scan. |
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Ano de publicação: |
2016 |
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Fonte/Imprenta: |
BMC Genomics, v. 17, article 705, 2016. |
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DOI: |
https://doi.org/10.1186/s12864-016-3049-8 |
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Idioma: |
Inglês |
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Conteúdo: |
Background- Misassembly signatures, created by shuffling the order of sequences while assembling a genome, can be detected by the unexpected behavior of marker linkage disequilibrium (LD) decay. We developed a heuristic process to identify misassembly signatures, applied it to the bovine reference genome assembly (UMDv3.1) and presented the consequences of misassemblies in two case studies. Results -We identified 2,906 single nucleotide polymorphism (SNP) markers presenting unexpected LD decay behavior in 626 putative misassembled contigs, which comprised less than 1 % of the whole genome. Although this represents a small fraction of the reference sequence, these poorly assembled segments can lead to severe implications to local genome context. For instance, we showed that one of the misassembled regions mapped to the POLL locus, which affected the annotation of positional candidate genes in a GWAS case study for polledness in Nellore (Bos indicus beef cattle). Additionally, we found that poorly performing markers in imputation mapped to putative misassembled regions, and that correction of marker positions based on LD was capable to recover imputation accuracy. Conclusions - This heuristic approach can be useful to cross validate reference assemblies and to filter out markers located at low confidence genomic regions before conducting downstream analyses. |
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Palavras-Chave: |
GWAS; Imputation; Misassembly. |
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Thesagro: |
Bos Indicus; Bos Taurus. |
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Thesaurus NAL: |
Genome; linkage disequilibrium. |
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Categoria do assunto: |
L Ciência Animal e Produtos de Origem Animal |
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Marc: |
LEADER 02353naa a2200337 a 4500
001 2058210
005 2024-02-06
008 2016 bl uuuu u00u1 u #d
024 7 $ahttps://doi.org/10.1186/s12864-016-3049-8$2DOI
100 1 $aUTSUNOMIYA, A. T. H.
245 $aRevealing misassembled segments in the bovine reference genome by high resolution linkage disequilibrium scan.$h[electronic resource]
260 $c2016
520 $aBackground- Misassembly signatures, created by shuffling the order of sequences while assembling a genome, can be detected by the unexpected behavior of marker linkage disequilibrium (LD) decay. We developed a heuristic process to identify misassembly signatures, applied it to the bovine reference genome assembly (UMDv3.1) and presented the consequences of misassemblies in two case studies. Results -We identified 2,906 single nucleotide polymorphism (SNP) markers presenting unexpected LD decay behavior in 626 putative misassembled contigs, which comprised less than 1 % of the whole genome. Although this represents a small fraction of the reference sequence, these poorly assembled segments can lead to severe implications to local genome context. For instance, we showed that one of the misassembled regions mapped to the POLL locus, which affected the annotation of positional candidate genes in a GWAS case study for polledness in Nellore (Bos indicus beef cattle). Additionally, we found that poorly performing markers in imputation mapped to putative misassembled regions, and that correction of marker positions based on LD was capable to recover imputation accuracy. Conclusions - This heuristic approach can be useful to cross validate reference assemblies and to filter out markers located at low confidence genomic regions before conducting downstream analyses.
650 $aGenome
650 $alinkage disequilibrium
650 $aBos Indicus
650 $aBos Taurus
653 $aGWAS
653 $aImputation
653 $aMisassembly
700 1 $aSANTOS, D. J. A.
700 1 $aBOISON, S. A.
700 1 $aUTSUNOMIYA, Y. T.
700 1 $aMILANESI, M.
700 1 $aBICKHART, D. M.
700 1 $aAJMONE-MARSAN, P.
700 1 $aSOLKNER, J.
700 1 $aGARCIA, J. F.
700 1 $aFONSECA, R. da
700 1 $aSILVA, M. V. G. B.
773 $tBMC Genomics$gv. 17, article 705, 2016.
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Registro original: |
Embrapa Gado de Leite (CNPGL) |
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